Available Software:
Group ICA Toolbox (Includes GIFT
andEEGIFT):
Group ICA Toolbox is a MATLAB toolbox
which implements multiple algorithms for
independent component analysis and blind
source separation of group (and single subject)
functional magnetic resonance imaging data
and electro encephalogram data.
Group ICA Toolbox is listed on
NITRC . NITRC is funded by the National
Institutes of Health Blueprint for Neuroscience
Research, the Neuroimaging Informatics Tools
and Resources Clearinghouse (NITRC) facilitates
finding and comparing neuroimaging resources
for functional and structural neuroimaging
analyses.
For opening the project specific home
page, click on the image below.
| GIFT
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EEGIFT |
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Fusion ICA Toolbox (FIT):
FIT is a MATLAB toolbox which implements
the jointICA, parallel ICA and CCA with
joint ICA methods. It is used to examine
the shared information between the features
(SPM contrast image, EEG signal or SNPdata).
Fusion ICA Toolbox is listed on
NITRC . NITRC is funded by the National
Institutes of Health Blueprint for Neuroscience
Research, the Neuroimaging Informatics Tools
and Resources Clearinghouse (NITRC) facilitates
finding and comparing neuroimaging resources
for functional and structural neuroimaging
analyses.
For opening the project home page, click
on the image below.
Functional Network Connectivity
(FNC):
FNC is a Matlab toolbox which finds and
displays temporal relations amongst components.
This can help determine causal relations
in the brain. For opening the project home
page, click on the image below.
Group Inter-participant Correlation
(GIPC, "Gypsy"):
GIPC is a Matlab toolbox that can compare
spatial activation similarities amongst
subjects in a study group, as well as comparing
group spatial activations amongst different
study groups. For opening the project home
page, click on the image below.
Laterality User Interface (LUI):
LUI is a Matlab toolbox that generates
the lateral difference maps of brain images.
For opening the project home page, click
on the image below.
Square-root Cubature Kalman Filter
(SCKS)
This toolbox contains implementation
of square-root Cubature Kalman Filter and
square-root Rauch-Tang-Striebel smoother
(SCKF-SCKS).
Please click on
SCKS for opening
the project page.
fMRI Simulation Toolbox (SimTB):
SimTB is a Matlab toolbox allowing for
flexible generation of fMRI datasetsunder
a model of spatiotemporal separability and
is designed to facilitate the testing of
a variety of analytic methods.
For opening the project specific home
page click on the image below.
Wavelet Denoising Toolbox (WaveIDiot):
WaveIDioT is a Matlab toolbox allowing for improved 3-D denoising of fMRI data sets using a wavelet-based hierarchical approach. For opening the project specific home
page click on the image below.
MANCOVAN
Tools for Multivariate Analysis.
Please click on
MANCOVAN for opening
the project page.
Polyssifier
Run a multitude of classifiers on your data and get an AUC report
Please click on
Polyssifier for opening
the project page.
Pl2mind
Pl2mind is an extension for Pylearn2 specifically for neuroimaging and other brain data applications. It contains unique datasets directed to
incorporating 3d brain data into deep models implemented in Pylearn2. pl2mind is currently under rapid development at the Mind Research Network (mrn.org), and
will continue to expand as it is used more to facilitate different kinds of brain research.
Please click on
Pl2mind for opening
the project page.
4D FFT Toolbox (fft_4d_toolbox_v1.0a):
4D FFT toolbox is used to compute spatio-spectral temporal profiles. For opening the project specific home
page click on the image below.
sMRI Simulator
Simulate sMRI data. Please follow the link to download the software and Example simulation .
SIMEEG
EEG simulation scripts. Please click on
SIMEEG for opening
the project page.
IRVI
Iterative Refinement of the Approximate Posterior for Directed Belief Networks. Please follow the link to download the
software.
Cortex
Cortex is a framework for training and evaluating neural networks using Theano. Please follow the link to download the
software.
MeshNet
Torch implementation of MeshNet architecture and it's trained weights for white and gray matter segmentation. Please follow the link to download the
software.
Average Sliding Window
Average sliding window correlation method for dynamic functional connectivity. Simulation code and examples can be downloaded at github.
Catalyst Neuro
PyTorch framework for DL research and development. Please follow link to download code.
The development of these toolboxes were
funded in part by the Department of
Energy, #DE-FG02-99ER62764.
MISA-pytorch
PyTorch implementation for Multidataset Independent Subspace Analysis (MISA). Please follow link to download code.
For more info click link above to visit the GITHUB site.
